1st International CellML Workshop (2007)

Inaugural CellML workshop to showcase community developments and consolidate the project roadmap

The inaugural CellML workshop was held at the Auckland Bioengineering Institute at The University of Auckland on April 4 & 5 2007 with financial support from the New Zealand Institute of Mathematics and its Applications and the Maurice Wilkins Centre for Molecular Biodiscovery. The general theme of the workshop was to showcase developments within the CellML community and start thinking about where the community should be heading.

The initial workshop announcement is available along with the workshop programme. The final programme on the day is given below with links to people's presentations.

Programme

April 4

  • Duane Malcolm (The University of Auckland) - Visualising Physiome Databases (pdf)
  • David Nickerson on behalf of Jim Schaff (University of Connecticut Health Center) - Virtual Cell and CellML (ppt)
  • Erik Butterworth via satellite from Seattle (University of Washington) - JSim & CellML (html)
  • Takao Shimayoshi (ASTEM Research Institute, Kyoto) - Software Tools & Techniques, Cell/Biodynamics Simulation Project of Kyoto University (pdf: slides, handouts)
  • Andrew Miller (The University of Auckland)
  • Ben Hui (The University of New South Wales) - Parameter Optimisation of Excitable Cell Models using CellML (pdf, ppt)
  • David Chang (The University of New South Wales)
  • Randy Owen (University of Oxford) - Validation and Optimisation of Cardiac Cellular Models (pdf)
  • Sarala Dissanayake (The University of Auckland)
  • Taishin Nomura (Osaka University)
  • Wilfred Li (National Biomedical Computation Resource, UCSD) - Developing Reusable Software Infrastructure – Middleware – for Multiscale Modeling (ppt)
  • Peter Hunter (The University of Auckland)
  • Poul Nielsen (The University of Auckland)

April 5

  • Andrew Miller (The University of Auckland)
  • David Nickerson (National University of Singapore) - Modelling with CellML 1.1 (pdf)
  • Matt Halstead (The University of Auckland) - What got left out? (pdf)
  • Mike Cooling (The University of Auckland)
  • Matt Halstead (The University of Auckland) - Ontologies and Repositories (pdf)
  • Edmund Crampin (The University of Auckland) - Model curation (ppt)
  • Shane Blackett (The University of Auckland) - FieldML
  • Poul Nielsen (The University of Auckland) - Variable typing in CellML (whiteboard presentation)
  • Peter Hunter (The University of Auckland)