Workshop Programme

The programme for the 2012 CellML Workshop.


A version better suited to printing is also available.


Monday Tuesday
8:15 Ferry from Auckland
9:00 - 10:30
  • Welcome (pdf)
  • Poul Nielsen: Introduction to CellML (ppt)
  • Andre: CSim, JSim (pdf)
10:00 Ferry from Auckland
Morning Tea
11:00 - 12:30
  • Randall Britten: ABI Bioengineering Software R&D update (link, pdf)
  • Andrew Miller: The CellML API: an update (pdf)
  • Chris Bradley: OpenCMISS (pptx)
  • Ting Yu: Evaluating the potential of using FPGAs to accelerate CellML models
  • Tommy Yu: Physiome Model Repository 2
  • David Brooks: BioSignalML -- Putting biosignals onto the Semantic Web (pdf)
13:30 - 15:00
  • Richard Christie: FieldML update and future directions
  • Andrew Miller: Representing Uncertainty in CellML (pdf)
  • Andrew Miller: A Draft for CellML 1.2 (pdf)
  • Andre: The Simulation Experiment Markup Language (SED-ML) (pdf)
  • Lukas Endler: models database; MIRIAM services; (pdf)
  • Vickie Shim, Peter Pivonka, Peter Hunter & Justin Fernandez: Multiscale modelling of the bone cartilage interface
  • Shameer Sathar: GI modelling
  • Harald Martens: Visualizing the consequences of model changes by multivariate metamodelling
Afternoon Tea
15:30 - 17:00
  • Alan Garny: OpenCOR (pdf)
  • Akira Amano: Description Language of Calculation Scheme for Automatic Simulation Code Generation (ppt)
  • Takao Shimayoshi: Software Environment and Technologies for Cell Physiological Modelling (pdf)
  • Harvey Ho: Curate hepatology models (ppt)
  • Maxwell Neal: Capturing the biophysical meaning of model contents with the SemSim architecture
  • Mike Cooling: Discussion regarding model annotation (pptx)
17:00 - 17:30
  • Catherine Lloyd: My life with CellML
  • Peter Hunter: Overview of recent Physiome developments (pptx)
18:15 Ferry to Auckland