CellML Tutorials

This section contains a set of tutorials and documents that describe how to use CellML and its associated software. These documents are written to be independent, but it would help to start at the top of this list and work down.

Introduction to modelling with CellML using OpenCell

By following this tutorial you will learn how to create a simple, functional CellML model from scratch using a CellML editing and simulation environment called OpenCell, and how to display the results of simulating this model on a graph.

Introduction to modelling with CellML using COR

This tutorial helps you get started with CellML by guiding you through the process of building a model with COR, then using the model you have created to introduce the various parts that make up a CellML file. Modular modelling using CellML 1.1 is also discussed.

Translating a mathematical model into CellML

This tutorial describes the multi-step process of translating a model into CellML. This process typically involves the identification of a model in a published paper, followed by its translation into CellML, simulation, and curation, and ends with the model being uploaded into the CellML Model Repository.

Running simulations and sessions with OpenCell

A OpenCell session is a configuration file that allows a user to set up the interface to display a set of simulation results in a particular way. Sessions are particularly useful for demonstration purposes such as getting a model to automatically reproduce.

Curating models in the CellML Model Repository

An outline of theory underlining CellML model curation and the steps we undertake to get a model into a working condition.

Modular modelling with CellML 1.1

This tutorial discusses how CellML 1.1 can be used to create modular models.