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You are here: Home / Community / Events / Workshops / 3rd International CellML Workshop (2009) / Resources for CellML SBGN SBO BioPAX MIASE Workshop 2009
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Resources for CellML SBGN SBO BioPAX MIASE Workshop 2009

A (by no means comprehensive) list of useful resources related to the workshop program

 

CellML

 

  • CellML FAQ
  • CellML Model Repository

 

Specifications:

 

 

  • CellML 1.1 Specification
  • CellML Metadata 1.0 Specification
  • CellML Simulation Metadata Specification
  • CellML Graphing Metadata Specification
  • CellML 1.2 Specification draft

 

Tools:

 

 

  • OpenCell
  • COR

 

SBGN

 

  • SBGN FAQ (PD Level 1)
  • SBGN on SourceForge

 

Specifications:

 

 

  • Process Diagram Specification

 

Tools:

 

 

  • CellDesigner

 

 

SBO

 

  • SBO FAQ
  • SBO on SourceForge
  • SBO Browser

 

 

BioPAX


  • BioPAX wiki
  • BioPAX Level 2, Version 1.0
  • BioPAX Level 3, Version 0.92 (Release Candidate 3)
  • PAXtools

 

 

MIASE

 

  • MIASE on SourceForge
  • MIASE guidelines

 

  • SED-ML - Simulation Experiment Description Markup Language

 

  • KiSAO - Kinetic Simulation Algorithm Ontology

 

 

Standards and languages

 

  • SBML
  • insilicoML
  • FieldML
  • MIBBI - Minimum Information for Biological and Biomedical Investigations
  • OPB: Ontology of Physics for Biology

 

 

Software and repositories

 

  • Chaste
  • VCell
    • VCell Database
  • CompuCell3D
  • euHeartDB
  • BioModels Database
  • EPE (Edinburgh Pathway Editor)
  • Arcadia

 

 

Navigation
  • Announcing the combined CellML SBGN SBO BioPAX MIASE Workshop 2009
  • Programme
  • Delegates
  • Detailed Programme
  • Resources for CellML SBGN SBO BioPAX MIASE Workshop 2009
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