PMR2 curation flags
Satisfaction of requirements
- Fulfills requirements
- Does not fulfill requirements
- Partially fulfills requirements
- (scale? quantification?)
- Unknown
Requirements:
MODEL VALIDITY
Is it valid XML?
Is it valid CellML?
Is it from a peer reviewed publication?
- were typed parameter sets & equations used to construct CellML description?
- was model code used to construct CellML description
Does it match the publication?
- parameters and initial conditions match publication
- Model is appropriately constrained?
- units match publication?
- units are consistent (dimensionally, in scale)
- mathematics match publication?
- output matches publication
- how qualified / quantified?
- by figures? which figures?
- by comparison with output from model code in other format?
Has the model been verified by a domain expert?
Has it been altered from the publication?
- alterations authorised by original author(s)?
- updated from new data?
- updated with new equations?
Satisfies physical constraints
- conservation of mass
- conservation of charge
- conservation of energy
- conservation of momentum
METADATA & ANNOTATION
Is it MIRIAM compliant?
Metadata contains appropriate version history
Metadata contains full biological annotation
SIMULATION
What simulation environments does it run in? (and what version?)
- COR
- PCEnv
- Jsim
- YAPE