Curated models in Biomodels but not in CellML repository as of 02/08

• Edelstein1996

A kinetic mechanism for nicotinic acetylcholine receptors based on multiple allosteric transitions. Pubmed id 8983160

• Kholodenko2000

Pubmed id 10712587 Title Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.

• Levchenko2000

Pubmed id 10823939 Title Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties.

• Elowitz2000

Pubmed id 10659856 Title A synthetic oscillatory network of transcriptional regulators.

• Poolman2004

Pubmed id 15073223 Title Applications of metabolic modelling to plant metabolism.

• Curto1998

Pubmed id 9664759 Title Mathematical models of purine metabolism in man.

• Morrison1989

Pubmed id 2732237 Title Folate cycle kinetics in human breast cancer cells.

• Rohwer2001

Pubmed id 11513743 Title Analysis of sucrose accumulation in the sugar cane culm on the basis of in vitro kinetic data.

• Scheper1999

Pubmed id 9870936 Title A mathematical model for the intracellular circadian rhythm generator.

• Smolen2002

Pubmed id 12414672 Title A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator.

• Markevich2004

Pubmed id 14744999 Title Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.

• Markevich2005

Pubmed id 14744999 Title Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.

• Kofahl2004

Pubmed id 15300679 Title Modelling the dynamics of the yeast pheromone pathway.

• Brown2004

Pubmed id 14525003 Title Statistical mechanical approaches to models with many poorly known parameters.

• Smolen2004

Pubmed id 15111397 Title Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK.

• Rohwer2000

Pubmed id 10889194 Title Understanding glucose transport by the bacterial phosphoenolpyruvate:glycose phosphotransferase system on the basis of kinetic measurements in vitro.

• Field1974

Oscillations in chemical systems. IV. Limit cycle behavior in a model of a real chemical reaction

• Kongas2001

Creatine kinase in energy metabolic signaling in muscle

• Nielsen1998

Pubmed id 17029704 Title Sustained oscillations in glycolysis: an experimental and theoretical study of chaotic and complex periodic behavior and of quenching of simple oscillations.

• Borghans1997

Pubmed id 17029867 Title Complex intracellular calcium oscillations. A theoretical exploration of possible mechanisms.

• Oxhamre2005

Pubmed id 15596518 Title A minimal generic model of bacteria-induced intracellular Ca2+ oscillations in epithelial cells.

• Kholodenko1999

Pubmed id 10514507 Title Quantification of short term signaling by the epidermal growth factor receptor.

• Sasagawa2005

Pubmed id 15793571 Title Prediction and validation of the distinct dynamics of transient and sustained ERK activation.

• Martins2003

Pubmed id 12873422 Title Kinetic modelling of Amadori N-(1-deoxy-D-fructos-1-yl)-glycine degradation pathways. Part II--kinetic analysis.

• Chassagnole2002

Pubmed id 17590932 Title Dynamic modeling of the central carbon metabolism of Escherichia coli.

• Brands2002

Pubmed id 12405768 Title Kinetic modeling of reactions in heated monosaccharide-casein systems.

• Ferreira2003

Pubmed id 12911334 Title A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose.

• Ataullahkhanov1996

Pubmed id 8733433 Title A possible role of adenylate metabolism in human erythrocytes: simple mathematical model.

• Locke2005

Pubmed id 16729048 Title Extension of a genetic network model by iterative experimentation and mathematical analysis.

• Fridlyand2003

Pubmed id 12644446 Title Modeling of Ca2+ flux in pancreatic beta-cells: role of the plasma membrane and intracellular stores.

• bhartiya2003

Pubmed id 12787031 Title Dynamic model of Escherichia coli tryptophan operon shows an optimal structural design.

• Galazzo1990

Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae

• Yildirim2003

Pubmed id 12719218 Title Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data.

• Fung2005

Pubmed id 15875027 Title A synthetic gene-metabolic oscillator.

• Fuss2006

Pubmed id 16873466 Title Bistable switching and excitable behaviour in the activation of Src at mitosis.

• Holzhutter2004

Pubmed id 15233787 Title The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.

• Bakker2001

Pubmed id 11415442 Title Roles of triosephosphate isomerase and aerobic metabolism in Trypanosoma brucei.

• Xu2003

Pubmed id 12771127 Title Kinetic analysis of receptor-activated phosphoinositide turnover.

• Blum2000

Pubmed id 10662710 Title A mathematical model quantifying GnRH-induced LH secretion from gonadotropes.

• Goldbeter2006

Pubmed id 16595882 Title A model for the dynamics of human weight cycling.

• Suh2004

Pubmed id 15173220 Title Regulation of KCNQ2/KCNQ3 current by G protein cycling: the kinetics of receptor-mediated signaling by Gq.

• Thomsen1988

Pubmed id 2904647 Title Inhibition of adenylate cyclase is mediated by the high affinity conformation of the alpha 2-adrenergic receptor.

• Maurya2005

Pubmed id 16986265 Title Reduced-order modelling of biochemical networks: application to the GTPase-cycle signalling module.

• Bornheimer2004

Pubmed id 15520372 Title Computational modeling reveals how interplay between components of a GTPase-cycle module regulates signal transduction.

• Proctor2006

Modelling the checkpoint response to telomere uncapping in budding yeast

• Maeda2006

Pubmed id 16923126 Title Ca2+ -independent phospholipase A2-dependent sustained Rho-kinase activation exhibits all-or-none response.

• Locke2006

Pubmed id 17102804 Title Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.

• Proctor2005

Pubmed id 15610770 Title Modelling the actions of chaperones and their role in ageing.

• Fuentes2005

Pubmed id 15634334 Title Kinetics of intra- and intermolecular zymogen activation with formation of an enzyme-zymogen complex.

• Yamada2003

Pubmed id 12527385 Title Control mechanism of JAK/STAT signal transduction pathway.

• Zeilinger2006

Pubmed id 17102803 Title A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9.

• Goldbeter1990

Pubmed id 2304911 Title Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation.

• Laub1998

Pubmed id 9843585 Title A molecular network that produces spontaneous oscillations in excitable cells of Dictyostelium.

• Rozi2003

Pubmed id 14556891 Title A theoretical study of effects of cytosolic Ca2+ oscillations on activation of glycogen phosphorylase.

• Vilar2006

Pubmed id 16446785 Title Signal processing in the TGF-beta superfamily ligand-receptor network.

• Legewie2006

Pubmed id 16978046 Title Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability.

• Klipp2002

Pubmed id 12423338 Title Prediction of temporal gene expression. Metabolic opimization by re-distribution of enzyme activities.

• Proctor2007

Pubmed id 17408507 Title An in silico model of the ubiquitin-proteasome system that incorporates normal homeostasis and age-related decline.

• Yang2007

Pubmed id 17381237 Title Dynamic simulations on the arachidonic acid metabolic network.

• Novak1993

Pubmed id 8126097 Title Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.

• Kowald2006

Pubmed id 16085106 Title Alternative pathways as mechanism for the negative effects associated with overexpression of superoxide dismutase.

• Haberichter2007

Pubmed id 17299420 Title A systems biology dynamical model of mammalian G1 cell cycle progression.

• Qu2003

Pubmed id 14645053 Title Dynamics of the cell cycle: checkpoints, sizers, and timers.

• Clarke2006

Pubmed id 17186703 Title Systems theory of Smad signalling.

• Dupont1992

Pubmed id 1316185 Title Protein phosphorylation driven by intracellular calcium oscillations: a kinetic analysis.

• Somogyi1990

Pubmed id 1904060 Title Hormone-induced calcium oscillations in liver cells can be explained by a simple one pool model.

• McClean2007

Pubmed id 17259986 Title Cross-talk and decision making in MAP kinase pathways.

• Dupont1991

Pubmed id 1647878 Title Signal-induced Ca2+ oscillations: properties of a model based on Ca(2+)-induced Ca2+ release.

• Golomb2006

Pubmed id 16807352 Title Contribution of persistent Na+ current and M-type K+ current to somatic bursting in CA1 pyramidal cells: combined experimental and modeling study.

• Chan2004

Pubmed id 15255048 Title Feedback control of T-cell receptor activation.

• Fisher2006

Pubmed id 17031595 Title NFAT and NFkappaB activation in T lymphocytes: a model of differential activation of gene expression.

• Wu2006

Pubmed id 16375866 Title Diethyl pyrocarbonate, a histidine-modifying agent, directly stimulates activity of ATP-sensitive potassium channels in pituitary GH(3) cells.

• Komarova2005

Pubmed id 16729058 Title A theoretical framework for specificity in cell signaling.

• Izhikevich2003

Simple model of spiking neurons

• Izhikevich2004

Pubmed id 15484883 Title Which model to use for cortical spiking neurons?

• Bertram2006

Pubmed id 16434725 Title Endothelin action on pituitary lactotrophs: one receptor, many GTP-binding proteins.

• Hoffmann2002

Pubmed id 12424381 Title The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation.

• Calzone2007

Pubmed id 17667953 Title Dynamical modeling of syncytial mitotic cycles in Drosophila embryos.

• ODea2007

Pubmed id 17486138 Title A homeostatic model of IkappaB metabolism to control constitutive NF-kappaB activity.

• Morris2002

Pubmed id 11959850 Title Kinetic mechanism of activation of the Cdk2/cyclin A complex. Key role of the C-lobe of the Cdk.

• Singh2006

Pubmed id 16752369 Title Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes.