The CellML project team

The CellML project is being coordinated by a team primarily based at the Auckland Bioengineering Institute at The University of Auckland and the Cardiac Electrophysiology Group at Oxford University.

Please send questions or feedback relating to CellML to the CellML discussion mailing list. Correspondence relating to this website should be sent to webmaster@cellml.org.

Project team

 

Associate Professor Poul Nielsen

Associate Professor Poul Nielsen

Poul Nielsen (p.nielsen@auckland.ac.nz), Associate Professor in the Engineering Science Department and a principal investigator at the Auckland Bioengineering Institute. He leads the CellML project and has been the main architect of the language. He is currently supervising several PhD projects that are developing new aspects of CellML.

Professor Peter Hunter

Professor Peter Hunter

Peter Hunter (p.hunter@auckland.ac.nz), Professor of Engineering Science and Director of the Auckland Bioengineering Institute. He heads the IUPS Physiome Project under which CellML is being developed. His main role in the CellML Project is to to ensure continued funding for developing the website, model repository and associated CellML tool development in Auckland and to coordinate CellML with the Physiome Project.

Randall Britten

Randall Britten

Randall Britten (r.britten@auckland.ac.nz) is the Software Development Leader at the Auckland Bioengineering Institute. Randall supervises CellML related software development.

Mike Cooling

Mike Cooling

Mike Cooling (m.cooling@auckland.ac.nz) PhD, has a background in software development and management consulting. He is a Research Scientist at the Auckland Bioengineering Institute with interests in modularity and reuse of CellML models, mathematical cardiology, computational immunology, modelling workflow, signal transduction pathways and synthetic biology.

Jonathan Cooper

Jonathan Cooper

Jonathan Cooper (jonathan.cooper@cs.ox.ac.uk) is a Research Fellow in Computational Science based in the Computational Biology Group at the University of Oxford, with a background in computer science, software engineering, and computational biology. He has been developing tools supporting CellML since 2005, most notably the PyCml suite within Chaste, which enables robust and efficient use of CellML cell model descriptions within large scale cardiac simulations. Jonathan is currently developing the concept of "functional curation", which supports the specification of experiments through a protocol language, allowing an in silico version of a wet lab experiment to be run on a range of alternative (CellML) models and the results compared.  

Dougal Cowan

Dougal Cowan

Dougal Cowan (dj.cowan@auckland.ac.nz) is the technical writer for the Auckland Bioengineering Institute software projects group. He is involved in writing documentation for CellML tools, especially OpenCell, and is also involved in creating documentation and content for the CellML website.

Edmund Crampin

Edmund Crampin

Edmund Crampin is an Associate Professor at the Auckland Bioengineering Institute, where he leads the Systems Biology Group, and is a member of the Department of Engineering Science, at the University of Auckland.

Alan Garny

Alan Garny

Alan Garny (alan.garny@inria.fr) is a senior research scientist. Alan studied software engineering before undertaking a DPhil in the group of Denis Noble at the University of Oxford. Alan's expertise is in cardiac electrophysiological modelling, from single cell to tissue level, as well as in the development of cardiac modelling tools (he is the author of COR, the first public CellML-based environment). He is currently the project manager and lead developer of OpenCOR (a replacement for  COR and OpenCell), as well as still being involved in cardiac electrophysiological modelling.

Andrew Miller

Andrew Miller

Andrew Miller (ak.miller@auckland.ac.nz) is based at the Auckland Bioengineering Institute and develops a range of CellML tools, including the CellML DOM API (and the associated code generation and integration services), as well as OpenCell, a graphical CellML editor. He also has an interest in the development of CellML and the associated metadata specifications, especially with regard to the simulation of models and the display of simulation results. Andrew is also working towards a PhD on methods to combine biological knowledge with knowledge inferred by machine learning methods. He is using CellML to apply this to problems in Systems Biology.

David Nickerson

David Nickerson

David Nickerson (d.nickerson@auckland.ac.nz), PhD in Bioengineering, is a Research Fellow in the Auckland Bioengineering Institute at The University of Auckland where he leads the Auckland Kidney Physiome project. David is also involved in many aspects of the CellML project as well as various cardiac modelling projects. He also develops several CellML-related software tools.

Penny Noble

Penny Noble

Penny Noble (penny.noble@dpag.ox.ac.uk) has been a member of the Oxford Cardiac Electrophysiology Group (OCEG) in England since 1996. Her initial work was in the maintenance of the group's simulation software package Oxsoft HEART, initially developed by Prof Denis Noble and others. More recently she has been involved in the curation work to ensure that all published cell models are publicly available in the form of CellML files. She uses the OCEG's new software Cellular Open Resource (COR) (http://cor.physiol.ox.ac.uk/) for model validation.

Sarala Wimalaratne

Sarala Wimalaratne

Sarala Wimalaratne (sarala@ebi.ac.uk) PhD, has a background in software development. She is a Software Engineer at the European Bioinformatics Institute developing tools for supporting the semantic interoperability of biomedical resources.

Tommy Yu

Tommy Yu

Tommy Yu (tommy.yu@auckland.ac.nz) is a software engineer at the Auckland Bioengineering Institute. His responsibility is to continue development of the Physiome Model Repository, and support other software development related tasks for the CellML website such as the Zope/Plone based infrastructure it is built upon.

Past members

  • David Bullivant
  • Autumn Cuellar
  • Matt Halstead
  • Warren Hedley
  • James Lawson
  • Catherine Lloyd
  • Justin Marsh
  • Fred Livingston
  • Melanie Nelson