Andre's Model Repository

Andre's current models

With the current discussion on model repository design, I thought it might be useful for me to jot down what I am doing at the moment with regard to how my models are laid out on the local file ...

current models

This is a simple description of my own current local "repository" consisting of a mix of CellML 1.0 and 1.1 model. Just trying a wiki system as one way to look at this - might end up being more ...

models

This is my primary repository of published models. These are versions of the models which I have either written from scratch or taken from the cellml.org model repository (long ago) and corrected. ...

1962_noble

My implementation of the classical 1962 Noble cardiac model. Originally a CellML 1.0 model, I have added an interface which lets me import it and turn its self-pacing on and off.

protocols

This directory contains some standard experimental protocols that I frequently use. They are all designed to be imported into specific experiment models, which should set the appropriate protocol ...

common

Here is where I put *model*'s which are useful across all other models.

2004_tenTusscher

My original implementation of the 2004 ten Tusscher et al human ventricular cell model (TNNP).

2004_tenTusscher/components

All the individual components of the model. All models import ``../../common/units.xml`` to define required units. All these models define a single top-level (encapsulation) component which can be ...

2004_tenTusscher/experiments

Specific experiments using either components or entire models. All models import ``../../common/units.xml`` to define the required units.