- Info
Workshop Programme
The final programme for the 2021 International CellML Workshop
Monday, April 19
| Session 1, Welcome & Bond Graphs |
recording |
| David Nickerson - Welcome and housekeeping |
slides |
| Michael Pan - Analysing and simulating energy-based models in biology using BondGraphTools |
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| Jagir Hussan - Bondgraph editor plugin for OpenCOR |
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| Niloofar Shahidi - Model composition |
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| Session 2 - Lightning talks |
recording |
| David Nickerson - COMBINE |
slides |
| Harvey Ho - an update on in silico liver models |
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| David Nickerson - Center for Reproducible Biomedical Modeling |
slides |
| Alan Garny - OpenCOR and libOpenCOR |
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| Shengjie (Sherry) Zhang - Using CellML for pharmacokinetic (PK) modelling of panadol (APAP) |
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| Hugh Sorby - libCellML |
slides |
| David Nickerson - Annotations: Tools, libraries & quality metrics |
slides |
| Richard Christie |
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| Session 3 - Reproducibility and model curation |
recording |
| Thiranja Prasad Babarenda Gamage - Importance of curation and reproducibility for developing clinical workflows |
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| David Nickerson - Curation in practice: lessons from a reproducibility pilot with PLoS Computational Biology |
slides |
Tuesday, April 20
| Session 1 |
recording (missing start of session) |
| David Nickerson - SPARC FAIR Codeathon introduction |
slides, slides |
| Peter Hunter - 12 Labours: Extending the Physiome Project to the clinic and to home-based healthcare |
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| Anand Jain & Shahriar Iravanian - CellMLToolkit.jl, a Julia package for importing CellML models to Julia's component based modeling system: ModelingToolkit.jl |
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| Session 2 |
recording |
| Hugh Sorby - libCellML tutorial |
demonstration script |
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| Session 3 - Physiome Model Repository and publication of reproducible models |
recording |
| David Nickerson - PMR & the Physiome journal |
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| Yuda Munarko - Improving search in PMR |
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| Alan Wu - The SPARC Portal |
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| Tommy Yu - Rusty PMR |
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