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Papers
Garny, A., Nickerson, D., Cooper, J., Weber dos Santos, R., McKeever, S., Nielsen, P. and Hunter, P.J. CellML and associated tools and techniques. Philosophical Transactions of the Royal Society A (submitted).
- Nickerson, D.P., Corrias, A. and Buist, M.L. Reference descriptions of cellular electrophysiology models. Bioinformatics. 2008 April;24(8):1112-1114.
- Terkildsen, J.R., Niederer, S.A., Crampin, E.J., Hunter, P.J. and Smith, N.P. Using Physiome standards to couple cellular functions for cardiac excitation contraction. Experimental Physiology. 2008 March.
- Cooling, M., Hunter, P. and Crampin, E.J. Modeling Biological Modularity with CellML. IET Systems Biology. 2008 March;2(2):73-79.
- Nickerson, D., Nash, M., Nielsen, P., Smith, N. and Hunter, P. Computational multiscale modeling in the IUPS Physiome Project: Modeling cardiac electromechanics. IBM Journal of Research and Development. 2006 November;50(6):617-630.
- Hunter, P.J. Modeling Human Physiology: The IUPS/EMBS Physiome Project. Proceedings of the IEEE. 2006 April;94(4):678-691.
- Nickerson, D.P. and Hunter, P.J. The Noble cardiac ventricular electrophysiology models in CellML. Progress in Biophysics and Molecular Biology. 2006 Jan-April;90(1-3):346-359.
- Hunter, P.J. and Nielsen, P.M.F. A Strategy for Integrative Computational Physiology. Physiology. 2005 Oct;20(5):316-325.
- Nickerson, D. and Hunter, P. Using CellML in Computational Models of Multiscale Physiology. Conference Proceedings: 27th Annual International Conference of the IEEE Engineering in Medicine and Biology. 2005 Sept; 6096-6099.
- Crampin, E.J., Halstead, M.D.B., Hunter, P.J., Nielsen, P.M.F., Noble, D., Smith, N.P. and Tawhai, M. Computational physiology and the physiome project. Experimental Physiology: Translation and Integration. 2004 Jan;89(1):1-26.
- Lloyd, C.M., Halstead, M.D.B. and Nielsen, P.F. CellML: its future, present and past. Progress in Biophysics and Molecular Biology. 2004 Jun-Jul;85(2-3):433-450.
- Nielsen, P.F. and Halstead, M.D. The Evolution of CellML. Conference Proceedings: 26th Annual International Conference of the IEEE Engineering in Medicine and Biology. 2004;7:5411-5414.
- Cuellar, A.A., Lloyd, C.M., Nielsen, P.F., Bullivant, D.P., Nickerson, D.P. and Hunter, P.J. An Overview of CellML 1.1, a Biological Model Description Language. SIMULATION: Transactions of The Society for Modeling and Simulation International. 2003 Dec;79(12):740-747.
- Cuellar, A.A., Nielsen, P.F., Bullivant, D.P. and Hunter, P.J. CellML 1.1 for the Definition and Exchange of Biological Models. Conf. Proc. 2003 IFAC Symposium on Modelling and Control in Biomedical Systems. 2003 Nov; 451-456.
- Bullivant, D.P., Hedley, W.J., Hunter, P.J., Nelson, M.R. and Nielsen, P.F. Languages for the Definition and Exchange of Biological Models. Proc. of the Physiological Society of New Zealand. Volume 20, August 2001.
- Hedley W.J., Nelson, M.R., Nielsen, P.F., Bullivant, D.P. and Hunter, P.J. XML Languages for Describing Biological Models. Proceedings of the Physiological Society of New Zealand. Vol 19. December 2000.
PCEnv 0.4 and CellML API 1.4